R lang in main

2016-07-20 19:22:15 +03:00
parent 8e992833e8
commit 10be24d1b7
12 changed files with 377 additions and 0 deletions
@@ -0,0 +1,2 @@
+R_HOME_DIR=/usr/lib/R
+R_HOME=/usr/lib/R
@@ -0,0 +1,11 @@
+--- src/include/Makefile.in.orig	2010-06-15 18:18:54.000000000 +0000
+++ src/include/Makefile.in		2010-06-15 18:19:48.000000000 +0000
+@@ -81,7 +81,7 @@
+ Rmath.h0: $(srcdir)/Rmath.h0.in $(top_builddir)/config.status
+ 	@cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@
+
+-install: installdirs install-intl-@USE_INCLUDED_LIBINTL@
+install: $(OBJ_HEADERS) installdirs install-intl-@USE_INCLUDED_LIBINTL@
+ 	@for d in $(SUBDIRS); do \
+ 	  (cd $${d} && $(MAKE) $@) || exit 1; \
+ 	done
@@ -0,0 +1,13 @@
+--- src/main/unzip.h.orig	2011-09-24 19:35:53.000000000 -0700
+++ src/main/unzip.h	2011-09-24 19:37:06.000000000 -0700
+@@ -58,6 +58,10 @@
+ #define ZLIB_FILEFUNC_SEEK_END (2)
+ #define ZLIB_FILEFUNC_SEEK_SET (0)
+ 
+#ifndef OF
+#define OF(x) x
+#endif
+
+ #define ZLIB_FILEFUNC_MODE_READ      (1)
+ #define ZLIB_FILEFUNC_MODE_WRITE     (2)
+ #define ZLIB_FILEFUNC_MODE_READWRITEFILTER (3)
@@ -0,0 +1,12 @@
+diff -Nuar R-2.7.1.orig/src/unix/Makefile.in R-2.7.1/src/unix/Makefile.in
+--- R-2.7.1.orig/src/unix/Makefile.in	2008-06-23 12:38:27.000000000 +0300
+++ R-2.7.1/src/unix/Makefile.in	2008-06-24 16:40:23.000000000 +0300
+@@ -66,7 +66,7 @@
+ 
+ ## we need to build at install time to capture the correct 'rhome'
+ install-Rscript:
+-	$(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"$(rhome)"' -o Rscript \
+	$(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -DR_HOME='"/usr/lib/R/"' -o Rscript \
+ 	  $(srcdir)/Rscript.c
+ 	@$(MKINSTALLDIRS) "$(DESTDIR)$(Rexecbindir)"
+ 	@$(INSTALL_PROGRAM) Rscript "$(DESTDIR)$(Rexecbindir)/Rscript"
@@ -0,0 +1,43 @@
+diff -Nuar R-2.12.1.orig//config.site R-2.12.1/config.site
+--- R-2.12.1.orig//config.site	2010-11-14 01:05:06.000000000 +0200
+++ R-2.12.1/config.site	2010-12-22 07:11:10.429000021 +0200
+@@ -28,7 +28,7 @@
+ ## The paper size for the local (PostScript) printer.
+ ## It must either be left blank or set to one of 'a4' or 'letter'.
+ ## If left blank the system will use 'a4'.
+-## R_PAPERSIZE=a4
+ R_PAPERSIZE=a4
+ 
+ ## Set the default behavior of R when ending a session
+ ## Set this to one of '--save' or '--no-save' depending whether you
+@@ -207,23 +207,26 @@
+ ## If unset configure searches in turn for (currently)
+ ## firefox mozilla galeon opera xdg-open kfmclient gnome-moz-remote open
+ ## and uses the full path.
+-## R_BROWSER=
+R_BROWSER=xdg-open
+
+## Default pdf viewer
+R_PDFVIEWER=xdg-open
+ 
+ ## BLAS and LAPACK settings
+ ## Use BLAS_LIBS for all '-L' and '-l' options needed for linking
+ ## against an external BLAS implementation.
+-## BLAS_LIBS=
+## BLAS_LIBS=/usr/lib
+ ## Use LAPACK_LIBS for all '-L' and '-l' options needed for linking
+ ## against an external LAPACK implementation.  
+ ## Note that (see R-admin) that our main intention is to allow a
+ ## LAPACK-containing BLAS to be used, so this is rarely needed, and
+ ## it is not used if the BLAS already contains LAPACK.
+-## LAPACK_LIBS=
+## LAPACK_LIBS="-L/usr/lib -llapack -lblas"
+ 
+ ## Make name.
+ ## Set this if you want to use a make by another name.
+ ## For example, if your GNU make is called 'gmake', use 'MAKE=gmake'.
+-## MAKE=
+MAKE=gmake
+ 
+ ## Tar name
+ ## Set this to prefer a tar which has the capability to automagically
@@ -0,0 +1,42 @@
+diff -Nuar R-2.11.0.orig/configure.ac R-2.11.0/configure.ac
+--- R-2.11.0.orig/configure.ac	2010-04-01 01:10:02.000000000 +0300
+++ R-2.11.0/configure.ac	2010-05-02 18:42:50.276871339 +0300
+@@ -2508,7 +2508,6 @@
+ if test "${acx_blas_ok}" = "yes"; then
+   ## Try to figure out which BLAS was used.
+   case "${BLAS_LIBS0}" in
+-    *-latlas*) r_blas=ATLAS ;;
+     *-lsgemm*) r_blas=PhiPack ;;
+     *sunperf*) r_blas=SunPerf ;;
+     *-lessl*)  r_blas=ESSL ;;
+diff -Nuar R-2.11.0.orig/m4/R.m4 R-2.11.0/m4/R.m4
+--- R-2.11.0.orig/m4/R.m4	2010-03-28 01:10:03.000000000 +0200
+++ R-2.11.0/m4/R.m4	2010-05-02 18:44:38.987876278 +0300
+@@ -2536,19 +2536,6 @@
+   fi
+ fi
+ 
+-## BLAS linked to by default?  (happens on some supercomputers)
+-if test "${acx_blas_ok}" = no; then
+-  AC_CHECK_FUNC(${dgemm}, [acx_blas_ok=yes])
+-fi
+-
+-## BLAS in ATLAS library?  (http://math-atlas.sourceforge.net/)
+-if test "${acx_blas_ok}" = no; then
+-  AC_CHECK_LIB(atlas, ATL_xerbla,
+-               [AC_CHECK_LIB(f77blas, ${dgemm},
+-                             [acx_blas_ok=yes
+-                              BLAS_LIBS="-lf77blas -latlas"],
+-			     [], [-latlas])])
+-fi
+ 
+ ## BLAS in PhiPACK libraries?  (requires generic BLAS lib, too)
+ if test "${acx_blas_ok}" = no; then
+@@ -2744,7 +2731,6 @@
+   F77_SYMBOL(drotmg)();
+   F77_SYMBOL(dsbmv)();
+   F77_SYMBOL(dscal)();
+-  F77_SYMBOL(dsdot)();
+   F77_SYMBOL(dspmv)();
+   F77_SYMBOL(dspr)();
+   F77_SYMBOL(dspr2)();
@@ -0,0 +1 @@
+/usr/lib/R/lib
@@ -0,0 +1,31 @@
+diff -Nuar R-3.0.1.orig/configure.ac R-3.0.1/configure.ac
+--- R-3.0.1.orig/configure.ac	2013-03-25 01:05:05.000000000 +0200
+++ R-3.0.1/configure.ac	2013-05-18 23:41:55.803629789 +0300
+@@ -137,7 +137,7 @@
+   linux*)
+     ## Not all distros use this: some choose to march out of step  
+     case "${host_cpu}" in
+-      x86_64|mips64|ppc64|powerpc64|sparc64|s390x)
+      mips64|ppc64|powerpc64|sparc64|s390x)
+         if test -d /usr/lib64; then
+           libnn=lib64
+ 	fi
+diff -Nuar R-3.0.1.orig/src/scripts/R.sh.in R-3.0.1/src/scripts/R.sh.in
+--- R-3.0.1.orig/src/scripts/R.sh.in	2013-03-06 01:02:41.000000000 +0200
+++ R-3.0.1/src/scripts/R.sh.in	2013-05-18 23:42:28.075630689 +0300
+@@ -7,13 +7,13 @@
+    linux*)
+      run_arch=`uname -m`
+      case "$run_arch" in 
+-        x86_64|mips64|ppc64|powerpc64|sparc64|s390x)
+        mips64|ppc64|powerpc64|sparc64|s390x)
+           libnn=lib64
+           libnn_fallback=lib
+         ;;
+         *)
+           libnn=lib
+-          libnn_fallback=lib64
+          libnn_fallback=lib
+         ;;
+      esac
+      if [ -x "@prefix@/${libnn}/R/bin/exec/R" ]; then