suitesparse : ver bump

science/mathematics/SuiteSparse/actions.py

@@ -4,260 +4,20 @@
 # Licensed under the GNU General Public License, version 3.
 # See the file http://www.gnu.org/licenses/gpl.txt
 
-from pisi.actionsapi import autotools
 from pisi.actionsapi import get
 from pisi.actionsapi import pisitools
 from pisi.actionsapi import shelltools
 
-amd_version = "2.3.1"
+shelltools.export("JOBS", get.makeJOBS().replace("-j", ""))
-amd_version_major = "2"
-btf_version = "1.2.0"
-btf_version_major = "1"
-camd_version = "2.3.1"
-camd_version_major = "2"
-ccolamd_version = "2.8.0"
-ccolamd_version_major = "2"
-cholmod_version = "2.0.1"
-cholmod_version_major = "2"
-colamd_version = "2.8.0"
-colamd_version_major = "2"
-csparse_version = "3.1.1"
-csparse_version_major = "3"
-klu_version = "1.2.1"
-klu_version_major = "1"
-ldl_version = "2.1.0"
-ldl_version_major = "2"
-umfpack_version = "5.6.1"
-umfpack_version_major = "5"
-spqr_version = "1.3.1"
-spqr_version_major = "1"
-rbio_version = "2.1.1"
-rbio_version_major = "2"
-SuiteSparse_config_ver = "4.2.0"
-SuiteSparse_config_major = "4"
 
 def build():
-    shelltools.export("CFLAGS","%s -fPIC -O3" % get.CFLAGS())
+    shelltools.system("BLAS=-lblas LAPACK=-llapack TBB=-ltbb SPQR_CONFIG=-DHAVE_TBB MY_METIS_LIB=/usr/lib/libmetis.so make")
-    
-    for d in ("AMD", "BTF", "CAMD", "CCOLAMD", "CHOLMOD", "COLAMD", "CSparse", "KLU", "LDL", "UMFPACK", "SPQR", "RBio"):
-        shelltools.makedirs("Doc/%s" % d)
-    shelltools.makedirs("Include")
-    shelltools.makedirs("Lib")
-
-    shelltools.cd("SuiteSparse_config")
-    autotools.make()
-    shelltools.system("ar x libsuitesparseconfig.a")
-    shelltools.cd("../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libsuitesparseconfig.so.%s -o \
-                       libsuitesparseconfig.so.%s ../SuiteSparse_config/*.o" % (SuiteSparse_config_major, SuiteSparse_config_ver))
-    shelltools.sym("libsuitesparseconfig.so.%s" % SuiteSparse_config_ver, "libsuitesparseconfig.so.%s" % SuiteSparse_config_major)
-    shelltools.sym("libsuitesparseconfig.so.%s" % SuiteSparse_config_ver, "libsuitesparseconfig.so")
-    shelltools.copy("../SuiteSparse_config/*.a", ".")
-    shelltools.cd("../SuiteSparse_config")
-    shelltools.copy("*.h", "../Include")
-
-    shelltools.cd("../AMD/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libamd.so.%s -o \
-                       libamd.so.%s ../AMD/Lib/*.o -lm -lrt" % (amd_version_major, amd_version))
-    shelltools.sym("libamd.so.%s" % amd_version, "libamd.so.%s" % amd_version_major)
-    shelltools.sym("libamd.so.%s" % amd_version, "libamd.so")
-    shelltools.copy("../AMD/Lib/*.a", ".")
-    shelltools.cd("../AMD")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in ("README.txt", "Doc/License", "Doc/ChangeLog", "Doc/*.pdf"):
-        shelltools.copy(d, "../Doc/AMD")
-
-    shelltools.cd("../BTF/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libbtf.so.%s -o \
-                       libbtf.so.%s ../BTF/Lib/*.o" % (btf_version_major, btf_version))
-    shelltools.sym("libbtf.so.%s" % btf_version, "libbtf.so.%s" % btf_version_major)
-    shelltools.sym("libbtf.so.%s" % btf_version, "libbtf.so")
-    shelltools.copy("../BTF/Lib/*.a", ".")
-    shelltools.cd("../BTF")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in ("README.txt", "Doc/*"):
-        shelltools.copy(d, "../Doc/BTF")
-
-    shelltools.cd("../CAMD/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libcamd.so.%s -o \
-                       libcamd.so.%s ../CAMD/Lib/*.o -lm" % (camd_version_major, camd_version))
-    shelltools.sym("libcamd.so.%s" % camd_version, "libcamd.so.%s" % camd_version_major)
-    shelltools.sym("libcamd.so.%s" % camd_version, "libcamd.so")
-    shelltools.copy("../CAMD/Lib/*.a", ".")
-    shelltools.cd("../CAMD")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in ("README.txt", "Doc/ChangeLog", "Doc/License", "Doc/*.pdf"):
-        shelltools.copy(d, "../Doc/CAMD")
-
-    shelltools.cd("../CCOLAMD/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libccolamd.so.%s -o \
-                       libccolamd.so.%s ../CCOLAMD/Lib/*.o -lm" % (ccolamd_version_major, ccolamd_version))
-    shelltools.sym("libccolamd.so.%s" % ccolamd_version, "libccolamd.so.%s" % ccolamd_version_major)
-    shelltools.sym("libccolamd.so.%s" % ccolamd_version, "libccolamd.so")
-    shelltools.copy("../CCOLAMD/Lib/*.a", ".")
-    shelltools.cd("../CCOLAMD")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in ("README.txt", "Doc/*"):
-        shelltools.copy(d, "../Doc/CCOLAMD")
-
-    shelltools.cd("../COLAMD/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libcolamd.so.%s -o \
-                       libcolamd.so.%s ../COLAMD/Lib/*.o -lm" % (colamd_version_major, colamd_version))
-    shelltools.sym("libcolamd.so.%s" % colamd_version, "libcolamd.so.%s" % colamd_version_major)
-    shelltools.sym("libcolamd.so.%s" % colamd_version, "libcolamd.so")
-    shelltools.copy("../COLAMD/Lib/*.a", ".")
-    shelltools.cd("../COLAMD")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in ("README.txt", "Doc/*"):
-        shelltools.copy(d, "../Doc/COLAMD")
-
-    shelltools.cd("../CHOLMOD/Lib")
-    autotools.make("-I/usr/include/metis")
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libcholmod.so.%s -o \
-                       libcholmod.so.%s ../CHOLMOD/Lib/*.o \
-                       -L/usr/lib/atlas -llapack libamd.so.%s \
-                       libcamd.so.%s libcolamd.so.%s \
-                       libccolamd.so.%s \
-                       libsuitesparseconfig.so.%s \
-                       -lm" % (cholmod_version_major,
-                               cholmod_version,
-                               amd_version_major,
-                               camd_version_major, colamd_version_major,
-                               ccolamd_version_major,
-                               SuiteSparse_config_major))
-    shelltools.sym("libcholmod.so.%s" % cholmod_version, "libcholmod.so.%s" % cholmod_version_major)
-    shelltools.sym("libcholmod.so.%s" % cholmod_version, "libcholmod.so")
-    shelltools.copy("../CHOLMOD/Lib/*.a", ".")
-    shelltools.cd("../CHOLMOD")
-    shelltools.copy("Include/*.h", "../Include")
-    shelltools.copy("README.txt", "../Doc/CHOLMOD")
-    shelltools.copy("Doc/*.pdf", "../Doc/CHOLMOD")
-    shelltools.copy("Cholesky/License.txt", "../Doc/CHOLMOD/Cholesky_License.txt")
-    shelltools.copy("Core/License.txt", "../Doc/CHOLMOD/Core_License.txt")
-    shelltools.copy("MatrixOps/License.txt", "../Doc/CHOLMOD/MatrixOps_License.txt")
-    shelltools.copy("Partition/License.txt", "../Doc/CHOLMOD/Partition_License.txt")
-    shelltools.copy("Supernodal/License.txt", "../Doc/CHOLMOD/Supernodal_License.txt")
-
-    shelltools.cd("../CSparse/Include")
-    shelltools.copy("cs.h", "../../Include")
-    shelltools.cd("../Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libcsparse.so.%s -o \
-                       libcsparse.so.%s ../CSparse/Lib/*.o -lm" % (csparse_version_major, csparse_version))
-    shelltools.sym("libcsparse.so.%s" % csparse_version, "libcsparse.so.%s" % csparse_version_major)
-    shelltools.sym("libcsparse.so.%s" % csparse_version, "libcsparse.so")
-    shelltools.copy("../CSparse/Lib/*.a", ".")
-    shelltools.cd("../CSparse")
-    shelltools.copy("Doc/*", "../Doc/CSparse")
-
-    shelltools.cd("../KLU/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libklu.so.%s -o \
-                       libklu.so.%s ../KLU/Lib/*.o \
-                       libamd.so.%s libcolamd.so.%s \
-                       libbtf.so.%s libcholmod.so.%s \
-                       libsuitesparseconfig.so.%s \
-                       " % (klu_version_major,
-                            klu_version,
-                            amd_version_major, colamd_version_major,
-                            btf_version_major, cholmod_version_major,
-                            SuiteSparse_config_major))
-    shelltools.sym("libklu.so.%s" % klu_version, "libklu.so.%s" % klu_version_major)
-    shelltools.sym("libklu.so.%s" % klu_version, "libklu.so")
-    shelltools.copy("../KLU/Lib/*.a", ".")
-    shelltools.cd("../KLU")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in "README.txt Doc/lesser.txt".split(" "):
-        shelltools.copy(d, "../Doc/KLU")
-
-    shelltools.cd("../LDL/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libldl.so.%s -o \
-                       libldl.so.%s ../LDL/Lib/*.o" % (ldl_version_major, ldl_version))
-    shelltools.sym("libldl.so.%s" % ldl_version, "libldl.so.%s" % ldl_version_major)
-    shelltools.sym("libldl.so.%s" % ldl_version, "libldl.so")
-    shelltools.copy("../LDL/Lib/*.a", ".")
-    shelltools.cd("../LDL")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in "README.txt Doc/ChangeLog Doc/lesser.txt Doc/*.pdf".split(" "):
-        shelltools.copy(d, "../Doc/LDL")
-
-    shelltools.cd("../UMFPACK/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,libumfpack.so.%s -o \
-                       libumfpack.so.%s ../UMFPACK/Lib/*.o \
-                       -L/usr/lib/atlas -llapack libamd.so.%s \
-                       libcholmod.so.%s \
-                       libsuitesparseconfig.so.%s \
-                       -lm" % (umfpack_version_major, 
-                               umfpack_version,
-                               amd_version_major,
-                               cholmod_version_major,
-                               SuiteSparse_config_major))
-    shelltools.sym("libumfpack.so.%s" % umfpack_version, "libumfpack.so.%s" % umfpack_version_major)
-    shelltools.sym("libumfpack.so.%s" % umfpack_version, "libumfpack.so")
-    shelltools.copy("../UMFPACK/Lib/*.a", ".")
-    shelltools.cd("../UMFPACK")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in "README.txt Doc/License Doc/ChangeLog Doc/gpl.txt Doc/*.pdf".split(" "):
-        shelltools.copy(d, "../Doc/UMFPACK")
-
-    shelltools.cd("../SPQR/Lib")
-    autotools.make('CXXFLAS="%s -DNPARTITION -fPIC -O3"' % get.CXXFLAGS())
-    shelltools.cd("../../Lib")
-    shelltools.system("g++ -shared -Wl,-soname,libspqr.so.%s -o \
-                       libspqr.so.%s ../SPQR/Lib/*.o \
-                       -L/usr/lib/atlas -L/usr/lib -llapack \
-                       libcholmod.so.%s \
-                       libsuitesparseconfig.so.%s \
-                       -lm" % (spqr_version_major,
-                               spqr_version,
-                               cholmod_version_major,
-                               SuiteSparse_config_major))
-    shelltools.sym("libspqr.so.%s" % spqr_version, "libspqr.so.%s" % spqr_version_major)
-    shelltools.sym("libspqr.so.%s" % spqr_version, "libspqr.so")
-    shelltools.copy("../SPQR/Lib/*.a", ".")
-    shelltools.cd("../SPQR")
-    shelltools.copy("Include/*.h*", "../Include")
-    shelltools.copy("README.txt", "README_SPQR.txt")
-    shelltools.copy("README_SPQR.txt", "../Doc/SPQR")
-    shelltools.copy("Doc/*", "../Doc/SPQR")
-
-    shelltools.cd("../RBio/Lib")
-    autotools.make()
-    shelltools.cd("../../Lib")
-    shelltools.system("gcc -shared -Wl,-soname,librbio.so.%s -o \
-                       librbio.so.%s ../RBio/Lib/*.o \
-                       libsuitesparseconfig.so.%s" % (rbio_version_major, rbio_version, SuiteSparse_config_major))
-    shelltools.sym("librbio.so.%s" % rbio_version, "librbio.so.%s" % rbio_version_major)
-    shelltools.sym("librbio.so.%s" % rbio_version, "librbio.so")
-    shelltools.copy("../RBio/Lib/*.a", ".")
-    shelltools.cd("../RBio")
-    shelltools.copy("Include/*.h", "../Include")
-    for d in "README.txt Doc/ChangeLog Doc/License.txt".split(" "):
-        shelltools.copy(d, "../Doc/RBio")
 
 def install():
-    pisitools.insinto("/usr/include/%s" % get.srcNAME().lower(), "Include/*.h")
+    shelltools.system("BLAS=-lblas LAPACK=-llapack TBB=-ltbb SPQR_CONFIG=-DHAVE_TBB MY_METIS_LIB=/usr/lib/libmetis.so \
-    pisitools.dodoc("README.txt")
+                       make INSTALL_LIB=%s/usr/lib INSTALL_INCLUDE=%s/usr/include install" % (get.installDIR(), get.installDIR()))
-    shelltools.copy("Doc/*", "%s/usr/share/doc/%s" % (get.installDIR(), get.srcNAME()))
+    
-    shelltools.cd("Lib")
+    # fix rpath
-    for l in shelltools.ls("*.so*"):
+    shelltools.system("chrpath -d %s/usr/lib/*" % get.installDIR())
-        pisitools.insinto("/usr/lib", l)
+    
-    for l in shelltools.ls("*.a"):
+    pisitools.dodoc("LICENSE*", "README*")
-        pisitools.insinto("/usr/lib", l)

science/mathematics/SuiteSparse/files/suitesparse-no-demo.patch

@@ -0,0 +1,11 @@
+--- SuiteSparse-5.6.0/Makefile.orig	2019-11-05 22:37:26.086135974 +0000
++++ SuiteSparse-5.6.0/Makefile	2019-11-05 22:37:37.549632429 +0000
+@@ -12,7 +12,7 @@
+ # Compile the default rules for each package
+ go: metis
+ 	( cd SuiteSparse_config && $(MAKE) )
+-	( cd Mongoose  && $(MAKE) CMAKE_OPTIONS='$(CMAKE_OPTIONS)' )
++	( cd Mongoose  && $(MAKE) library CMAKE_OPTIONS='$(CMAKE_OPTIONS)' )
+ 	( cd AMD && $(MAKE) )
+ 	( cd BTF && $(MAKE) )
+ 	( cd CAMD && $(MAKE) )

science/mathematics/SuiteSparse/pspec.xml

@@ -1,34 +1,41 @@
 <?xml version="1.0" ?>
-<!DOCTYPE PISI SYSTEM "http://www.pisilinux.org/projeler/pisi/pisi-spec.dtd">
+<!DOCTYPE PISI SYSTEM "https://www.pisilinux.org/projeler/pisi/pisi-spec.dtd">
 <PISI>
     <Source>
         <Name>SuiteSparse</Name>
-        <Homepage>http://www.cise.ufl.edu/research/sparse</Homepage>
+        <Homepage>http://faculty.cse.tamu.edu/davis/suitesparse.html</Homepage>
         <Packager>
-            <Name>PisiLinux Community</Name>
+            <Name>Pisi Linux Community</Name>
-            <Email>admins@pisilinux.org</Email>
+            <Email>admin@pisilinux.org</Email>
         </Packager>
-        <License>LGPLv2.1</License>
+        <PartOf>science.mathematics</PartOf>
-        <License>GPLv2</License>
+        <License>GPL</License>
         <IsA>library</IsA>
-        <Summary>Sparse matrix library</Summary>
+        <Summary>SuiteSparse, a suite of Sparse matrix software</Summary>
         <Description>SuiteSparse is a single archive that contains sparse matrix libraries.</Description>
-        <Archive sha1sum="13f5d8caa8df92a4d704426781365e55c09baf01" type="targz">http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.4.tar.gz</Archive>
+        <Archive sha1sum="ccc50177425d0d9bfe878786b8f2729c247efa90" type="targz">https://github.com/DrTimothyAldenDavis/SuiteSparse/archive/v5.7.2.tar.gz</Archive>
         <BuildDependencies>
-            <Dependency>lapack-devel</Dependency>
+            <Dependency>cmake</Dependency>
             <Dependency>blas-devel</Dependency>
-            <Dependency>libgcc</Dependency>
+            <Dependency>metis-devel</Dependency>
+            <Dependency>libquadmath</Dependency>
+            <Dependency>lapack-devel</Dependency>
+            <Dependency>intel-tbb-devel</Dependency>
         </BuildDependencies>
         <Patches>
+            <Patch>suitesparse-no-demo.patch</Patch>
         </Patches>
     </Source>
 
     <Package>
         <Name>SuiteSparse</Name>
+        <Summary>SuiteSparse, a suite of Sparse matrix software</Summary>
         <RuntimeDependencies>
-            <Dependency>lapack</Dependency>
             <Dependency>blas</Dependency>
-            <Dependency>libgcc</Dependency>
+            <Dependency>metis</Dependency>
+            <Dependency>lapack</Dependency>
+            <Dependency>libgomp</Dependency>
+            <Dependency>intel-tbb</Dependency>
         </RuntimeDependencies>
         <Files>
             <Path fileType="library">/usr/lib</Path>
@@ -49,11 +56,11 @@
 
     <History>
         <Update release="4">
-            <Date>2018-09-07</Date>
+            <Date>2020-05-24</Date>
-            <Version>4.4.4</Version>
+            <Version>5.7.2</Version>
-            <Comment>Rebuild with new toolchain</Comment>
+            <Comment>Major Version Bump</Comment>
-            <Name>Pisi Linux Community</Name>
+            <Name>Blue Devil</Name>
-            <Email>admin@pisilinux.org</Email>
+            <Email>bluedevil@sctzine.com</Email>
         </Update>
         <Update release="3">
             <Date>2017-04-24</Date>
@@ -77,4 +84,4 @@
             <Email>ayhanyalcinsoy@pisilinux.org</Email>
         </Update>
     </History>
-</PISI>
+</PISI>

science/mathematics/SuiteSparse/translations.xml

@@ -3,12 +3,13 @@
     <Source>
         <Name>SuiteSparse</Name>
         <Summary xml:lang="tr">Sparse matrix kütüphanesi</Summary>
-        <Description xml:lang="tr">Sparse matrix kütüphanesi.</Description>
+        <Description xml:lang="tr">SuiteSparse, Sparse matrix kütüphanesi içerir.</Description>
         <Description xml:lang="fr">Librairie de matrices Sparse.</Description>
     </Source>
 
     <Package>
         <Name>SuiteSparse-devel</Name>
         <Summary xml:lang="tr">SuiteSparse için geliştirme dosyaları</Summary>
+        <Description xml:lang="tr">SuiteSparse-devel, SuiteSparse için geliştirme dosyalarını içerir.</Description>
     </Package>
-</PISI>
+</PISI>